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A gene-coexpression network for global discovery of conserved genetic modules.

Josh Stuart Segal, E Koller, D Kim, Sk

Published in Science

To elucidate gene function on a global scale, we identified pairs of genes that are coexpressed over 3182 DNA microarrays from humans, flies, worms, and yeast. We found 22,163 such coexpression relationships, each of which has been conserved across evolution. This conservation implies that the coexpression of these gene pairs confers a selective ad...

Carbonic anhydrase and the precipitation of apatite.

Bachra, Bn Trautz, Or Mcconnell, D Frajola, Wj David Deamer

Published in Science

On theoretical grounds it is unlikely that the catalytic action of the enzyme carbonic anhydrase would be required for the precipitation of apatite in vitro. The presence of carbonic anhydrase in either active or inactivate form did not initiate precipitation in a metastable calcifying solution. It is unlikely that carbonate (or bicarbonate) ions a...

Type II collagen autoimmunity in otosclerosis and Meniere s Disease.

Yoo, Tj Josh Stuart Kang, Ah Townes, As Tomoda, K Dixit, S

Published in Science

Antibodies to collagen types I, II, and IV were measured in patients with otosclerosis and patients with Meniere s disease. Levels of antibodies to type II collagen were significantly higher in these patients than in control subjects, while no differences were found among levels of antibodies to collagen type I or type IV. These observations sugges...

Integrating genomes.

Zerbino, Dr Paten, B David Haussler

Published in Science

As genomic sequencing projects attempt ever more ambitious integration of genetic, molecular, and phenotypic information, a specialization of genomics has emerged, embodied in the subdiscipline of computational genomics. Models inherited from population genetics, phylogenetics, and human disease genetics merge with those from graph theory, statisti...

Long-read sequence assembly of the gorilla genome.

Gordon, D Huddleston, J Chaisson, Mj Hill, Cm Kronenberg, Zn Munson, Km Malig, M Raja, A Fiddes, I Hillier, Lw ...

Published in Science

Accurate sequence and assembly of genomes is a critical first step for studies of genetic variation. We generated a high-quality assembly of the gorilla genome using single-molecule, real-time sequence technology and a string graph de novo assembly algorithm. The new assembly improves contiguity by two to three orders of magnitude with respect to p...

Long-read sequence assembly of the gorilla genome.

Baker, C Armstrong, J Diekhans, M Paten, B Shendure, J Wilson, Rk David Haussler Chin, Cs Eichler, Ee Gordon, D ...

Published in Science

Accurate sequence and assembly of genomes is a critical first step for studies of genetic variation. We generated a high-quality assembly of the gorilla genome using single-molecule, real-time sequence technology and a string graph de novo assembly algorithm. The new assembly improves contiguity by two to three orders of magnitude with respect to p...

Evidence that the head of kinesin is sufficient for force generation and motility in vitro.

Yang, Jt Saxton, Wm Stewart, Rj Raff, Ec Goldstein, Ls

Published in Science

Kinesin is a mechanochemical protein that converts the chemical energy in adenosine triphosphate into mechanical force for movement of cellular components along microtubules. The regions of the kinesin molecule responsible for generating movement were determined by studying the heavy chain of Drosophila kinesin, and its truncated forms, expressed i...

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis, Erich D Mirarab, Siavash Aberer, Andre J Li, Bo Houde, Peter Li, Cai Ho, Simon Y W Faircloth, Brant C Nabholz, Benoit Howard, Jason T ...

Published in Science (New York, N.Y.)

To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered a highly resolved tree that confirms previously controversial sister or close relationships. We identified the first divergen...

Surface area of human erythrocyte lipids: reinvestigation of experiments on plasma membrane.

Bar, Rs David Deamer Cornwell, Dg

Published in Science

Ratios of the lipid monolayer area to the erythrocyte surface area are 2:1 at low surface pressures and approach 1: 1 at collapse pressures. Un saturated phospholipids in cholesterol-phospholipid complexes of membrane ex tracts resemble their saturated derivatives at collapse pressures. Area ratio and phospholipid area data are related by an equati...

Evolutionary and biomedical insights from the rhesus macaque genome.

Rocchi, M Schein, Je Baertsch, R Clarke, L Csürös, M Glasscock, J Harris, Ra Havlak, P Jackson, Ar Jiang, H ...

Published in Science

The rhesus macaque (Macaca mulatta) is an abundant primate species that diverged from the ancestors of Homo sapiens about 25 million years ago. Because they are genetically and physiologically similar to humans, rhesus monkeys are the most widely used nonhuman primate in basic and applied biomedical research. We determined the genome sequence of an...

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